[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 69 items for (author: morado & dr)

EMDB-17241:
C. elegans L1 80S ribosome
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17242:
C. elegans L1 larva 80S ribosome class 1
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17243:
C. elegans L1 larva 80S ribosome class 2
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17244:
C. elegans L1 larva 80S ribosome class 3
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17245:
C. elegans L1 larva 80S ribosome class 4
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17246:
C. elegans L1 larva body wall muscle tomogram
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17247:
C. elegans L1 larva ventral pharyngeal periphery tomogram
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17248:
Tomogram of the nucleus of a C. elegans L1 larva
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-18186:
C. elegans L1 larva
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Klebl DP, Schneider J, Beck F, Plitzko JM

EMDB-18187:
Focused refinment of 11-protofilament microtubule from C. elegans
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Klebl DP, Schneider J, Beck F, Plitzko JM

EMDB-16872:
Subtomogram average of long bridges of the yeast ER-mitochondria encounter structure (ERMES). The population half containing longer bridge structures was averaged.
Method: subtomogram averaging / : Wozny MR, Di Luca A, Morado DR, Picco A, Khaddaj R, Campomanes P, Ivanovic L, Hoffmann PC, Miller EA, Vanni S, Kukulski W

EMDB-16873:
Subtomogram average of bridges of the yeast ER-mitochondria encounter structure (ERMES)
Method: subtomogram averaging / : Wozny MR, Di Luca A, Morado DR, Picco A, Khaddaj R, Campomanes P, Ivanovic L, Hoffmann PC, Miller EA, Vanni S, Kukulski W

EMDB-16871:
Subtomogram average of short bridges of the yeast ER-mitochondria encounter structure (ERMES). The population half containing shorter bridge structures was averaged.
Method: subtomogram averaging / : Wozny MR, Di Luca A, Morado DR, Picco A, Khaddaj R, Campomanes P, Ivanovic L, Hoffmann PC, Miller EA, Vanni S, Kukulski W

EMDB-15355:
Electron cryo-tomography of the ER-mitochondria encounter structure ERMES
Method: electron tomography / : Wozny MR, Di Luca A, Morado DR, Picco A, Khaddaj R, Campomanes P, Ivanovic L, Hoffmann PC, Miller EA, Vanni S, Kukulski W

EMDB-15775:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in a nanodisc
Method: single particle / : Davies JS, North RA, Dobson RCJ

PDB-8b01:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in a nanodisc
Method: single particle / : Davies JS, North RA, Dobson RCJ

PDB-8bsh:
COPII inner coat
Method: subtomogram averaging / : Zanetti G, Pyle EW

EMDB-16183:
In situ structure of the Caulobacter crescentus S-layer
Method: subtomogram averaging / : von Kuegelgen A, Bharat T

EMDB-16207:
HIV-1 CA-SP1 subtomogram average with Relion4 from EMPIAR-10164 dataset, 3.2 A from 5 tomograms
Method: subtomogram averaging / : Ke Z, Briggs JAG, Scheres SHW

EMDB-16209:
HIV-1 CA-SP1 subtomogram average with Relion4 from EMPIAR-10164 dataset, 3.0 A from the full dataset
Method: subtomogram averaging / : Ke Z, Briggs JAG, Scheres SHW

PDB-8bqe:
In situ structure of the Caulobacter crescentus S-layer
Method: subtomogram averaging / : von Kuegelgen A, Bharat T

EMDB-13968:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in amphipol
Method: single particle / : North RA, Davies JS, Morado D, Dobson RCJ

PDB-7qha:
Cryo-EM structure of the Tripartite ATP-independent Periplasmic (TRAP) transporter SiaQM from Photobacterium profundum in amphipol
Method: single particle / : North RA, Davies JS, Morado D, Dobson RCJ

EMDB-15949:
COPII inner coat reprocessed with relion4.0
Method: subtomogram averaging / : Zanetti G, Pyle E

EMDB-13682:
In situ subtomogram average of autophagosome-associated protein filament
Method: subtomogram averaging / : Dahmane S, Morado DR, Carlson LA

EMDB-15390:
Subtomogram average of empty poliovirus particles
Method: subtomogram averaging / : Dahmane S, Carlson LA

EMDB-15391:
Subtomogram average of RNA-loaded poliovirus
Method: subtomogram averaging / : Dahmane S, Carlson LA

EMDB-15392:
Subtomogram average of membrane-tethered poliovirus
Method: subtomogram averaging / : Dahmane S, Carlson LA

EMDB-12237:
Subtomogram average reconstruction of humanVPS34 complex II bound to Rab5a on a lipid membrane
Method: subtomogram averaging / : Tremel S, Ohashi Y, Morado DR, Bertram J, Perisic O, Brandt LTL, von Wrisberg MK, Chen ZA, Maslen SL, Kovtun O, Skehel M, Rappsilber J, Lang K, Munro S, Briggs JAG, Williams RL

EMDB-12238:
Sample bin4 tomogram for the VPS34 complex II on Rab5a coupled lipid vesicles
Method: electron tomography / : Tremel S, Ohashi Y, Morado DR, Bertram J, Perisic O, Brandt LTL, von Wrisberg MK, Chen ZA, Maslen SL, Kovtun O, Skehel M, Rappsilber J, Lang K, Munro S, Briggs JAG, Williams RL

EMDB-12222:
tomogram of membrane tubules coated with metazoan retromer:SNX3 in the presence of Wls cargo.
Method: electron tomography / : Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

EMDB-12225:
tomogram of membrane tubules coated with fungal retromer:Grd19 in the presence of Kex2 cargo.
Method: electron tomography / : Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

EMDB-12221:
VPS26 dimer region of metazoan membrane-assembled retromer:SNX3 complex
Method: subtomogram averaging / : Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

EMDB-12224:
Vps26 dimer region of the fungal membrane-assembled retromer:Grd19 complex.
Method: subtomogram averaging / : Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

EMDB-12214:
human complex II-BATS bound to membrane-attached Rab5a-GTP
Method: subtomogram averaging / : Tremel S, Morado DR, Kovtun O, Williams RL, Briggs JAG, Munro S, Ohashi Y, Bertram J, Perisic O

EMDB-12236:
Reprocessing of EMPIAR-10389 data (urease) with Scipion
Method: single particle / : Sharov G, Morado DR, Carroni M, de la Rosa-Trevin JM

EMDB-12220:
VPS35/VPS29 arch of metazoan membrane-assembled retromer:SNX3 complex
Method: subtomogram averaging / : Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

EMDB-12223:
Vps35/Vps29 arch of fungal membrane-assembled retromer:Grd19 complex
Method: subtomogram averaging / : Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

EMDB-12226:
Vps35/Vps29 arch of fungal membrane-assembled retromer:Vps5 (SNX-BAR) complex.
Method: subtomogram averaging / : Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

EMDB-12147:
Immature HIV-1 Gag partial hexamer with 1 Gag subunit missing, obtained by wedge-masked difference map PCA classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12148:
Immature HIV-1 Gag partial hexamer with 2 Gag subunits missing, obtained by wedge-masked difference map PCA classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12149:
Immature HIV-1 Gag partial hexamer with 3 Gag subunits missing, obtained by wedge-masked difference map PCA classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12150:
Immature HIV-1 Gag partial hexamer with 1 Gag subunit missing, obtained by multi-reference classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12151:
Immature HIV-1 Gag partial hexamer with 2 Gag subunits missing, obtained by multi-reference classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12152:
Immature HIV-1 Gag partial hexamer with 3 Gag subunits missing, obtained by multi-reference classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12153:
Immature HIV-1 Gag complete hexamer obtained by multi-reference classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-11628:
Distance-dependent synaptic vesicle protein organisation.
Method: electron tomography / : Ginger L, Malsam J, Sonnen AF-P, Morado D, Scheutzow A, Sollner TH, Briggs JAG

EMDB-10381:
A 3.7 Angstrom structure of the EIAV CA-SP hexamer (C2) from Gag-deltaMA tubes assembled at pH8
Method: subtomogram averaging / : Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM

EMDB-10382:
A 3.9 Angstrom structure of the EIAV CA-SP hexamer (C6) from Gag-dMA spheres assembled at pH8
Method: subtomogram averaging / : Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM

EMDB-10383:
A structure of the EIAV CA-SP hexamer (C2) from Gag-deltaMA tubes assembled at pH6
Method: subtomogram averaging / : Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more